Everything


All Classes

bar.atlas_indexer.barIndexer
bar.atlas_indexer.barIndexerElement
bar.atlas_indexer.barIndexerGroupElement
bar.atlas_indexer.barIndexerObject
bar.atlas_indexer.barIndexerPropertyElement
bar.atlas_indexer.barIndexerSlideElement
bar.atlas_indexer.barIndexerStructureElement
bar.barAllenApiAtlas.barAllenApiAtlas
bar.barAllenApiAtlasPreprocessor.barAllenApiAtlasPreprocessor
bar.barAllenApiAtlasSpace.barAllenApiAtlasSpace
bar.barImageUnderlays.barBackgroundImageContourSlide
bar.barImageUnderlays.barBackgroundImageSlide
bar.barImageUnderlays.barSlideBackgorundElement
bar.barImageUnderlays.barSlideBackgroundList
bar.base.barAtlasSlideElement
bar.base.barBoundingBox
bar.base.barBregmaMetadataElement
bar.base.barCommentLabel
bar.base.barCoordinateMarker
bar.base.barCoronalMarker
bar.base.barGenericStructure
bar.base.barMarker
bar.base.barMetadataElement
bar.base.barObject
bar.base.barPath
bar.base.barPretracedSlide
bar.base.barPretracedSlideRenderer
bar.base.barRegularLabel
bar.base.barSlideRenderer
bar.base.barSpotLabel
bar.base.barStructureLabel
bar.base.barTracedSlide
bar.base.barTracedSlideRenderer
bar.base.barTransfMatrixMetadataElement
bar.base.barVectorSlide
bar.color.barColor
bar.color.barColorIndexer
bar.mbatParser.barMBATParser
bar.mbatParser.barMbatLabel
bar.neurolucida.barMarkerElement
bar.neurolucida.barNLcontour
bar.neurolucida.barNLelement
bar.neurolucida.barNLfile
bar.neurolucida.barNLzcoordList
bar.neurolucida.barTextElement
bar.neurolucida.nlParser
bar.parsers.barBitmapParser
bar.parsers.barExternalParser
bar.parsers.barGenericParser
bar.parsers.barVectorParser
bar.rec.barreconstructor.barReconstructionModule
bar.rec.index_holder.barReconstructorIndexer
bar.rec.index_holder.barReconstructorSlideElem
bar.rec.pipeline.barParam
bar.rec.pipeline.barPipeElem
bar.rec.pipeline.barPipeline
bar.rec.pipeline.barPipelineXML
bar.rec.pipeline.barVtkAllFlip
bar.rec.structure_holder.VTKStructuredPoints
bar.rec.structure_holder.structureHolder
bar.rec.thumbnail.Thumbnail
bar.sbaconverter.barSBAParser

All Functions

bar.atlas_indexer.remove_accents
bar.barAllenApiAtlasPreprocessor.cleanStructName
bar.base.CleanFilename
bar.base._printRed
bar.base._recurseTextNodeExtract
bar.base._removeWhitespacesXML
bar.base.cleanPotraceOutput
bar.base.debugOutput
bar.base.flatten
bar.base.getDictionaryFromFile
bar.base.getSlideTemplate
bar.base.processMarkers
bar.base.validateStructureName
bar.color.RGBtoHSVcolor
bar.color.floatColourToInt
bar.color.intColourToFloat
bar.image_process._areNearlyTheSame
bar.image_process.distance_transform
bar.image_process.floodFillScanlineStack
bar.image_process.getBestLabelLocation
bar.image_process.massCentre
bar.image_process.performTracing
bar.image_process.savitzky_golay
bar.image_process.selectBestGapFillingLevel
bar.image_process.tonpArray
bar.mbatParser._parse_hex
bar.rec.barreconstructor.HTMLColorToRGB
bar.rec.barreconstructor.VTKtoNumpy
bar.rec.formats.getFormatInfo
bar.rec.index_holder.qdist
bar.sbaconverter.cleanStructName
bar.slides_aligner._applyTransformCorrection
bar.slides_aligner.calculateAlignmentMatrix
bar.slides_aligner.calculateTransfFromMarkers
bar.slides_aligner.getTransformationMatrix
bar.slides_aligner.makeAlignment
bar.svgfix.__defineTransformationMatrix
bar.svgfix.__fixElement
bar.svgfix.__fixHeader
bar.svgfix.__fixLine
bar.svgfix.__fixPath
bar.svgfix.__fixPathDefinition
bar.svgfix.__fixPolygon
bar.svgfix.__fixPolyline
bar.svgfix.__fixText
bar.svgfix.__transformPoint
bar.svgfix.fixPathDefinition
bar.svgfix.fixSvgImage
bar.svgfix.getTransformMatrix
bar.svgfix.transformPoint
bar.svgpathparse.UnparsePath
bar.svgpathparse._mergeBoundingBox
bar.svgpathparse.chunks
bar.svgpathparse.extractBoundingBox
bar.svgpathparse.formatStyle
bar.svgpathparse.lexPath
bar.svgpathparse.mergeBoundingBox
bar.svgpathparse.modifyContour
bar.svgpathparse.parsePath
bar.svgpathparse.parseStyle

All Variables

bar.__package__
bar.atlas_indexer.CONF_ALIGNER_REFERENCE_COORDS
bar.atlas_indexer.CONF_HIERARCHY_ROOT_NAME
bar.atlas_indexer.__package__
bar.barAllenApiAtlas.BAR_CONF_DEFAULT_ALLEN_API_ATLAS
bar.barAllenApiAtlas.__package__
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_ATLASES_INDEX
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_ATLAS_ANNOTATION
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_ATLAS_INFO
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_ATLAS_ONTOLOGY
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_HIERARCHY_FILANEME
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_MAPPING_FILENAME
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_SPACES_DIRNAME
bar.barAllenApiAtlasPreprocessor.BAR_CONF_ALLEN_API_VOL_RES_MULTIPLIER
bar.barAllenApiAtlasPreprocessor.__package__
bar.barAllenApiAtlasSpace.BAR_CONF_DEFAULT_ALLEN_API_SPACE
bar.barAllenApiAtlasSpace.__package__
bar.barImageUnderlays.CONF_DEFAULT_BACKGROUND_ATTRIBUTES
bar.barImageUnderlays.CONF_DEFAULT_BACKGROUND_ATTRIBUTES_NS
bar.barImageUnderlays.CONF_DEFAULT_BACKGROUND_LIST
bar.barImageUnderlays.CONF_DEFAULT_BACKGROUND_LIST_NS
bar.barImageUnderlays.__package__
bar.base.BAR_BREGMA_METADATA_TAGNAME
bar.base.BAR_COMMENT_LABEL_COLOUR
bar.base.BAR_COMMENT_LABEL_PREFIX
bar.base.BAR_COORDINATE_MARKER_TEMPLATE
bar.base.BAR_CORONAL_MARKER_TEMPLATE
bar.base.BAR_DATA_LOCATION_ELEMENT
bar.base.BAR_DEFAULT_GROWLEVEL
bar.base.BAR_LABEL_MAX_LENGTH
bar.base.BAR_REGULAR_LABEL_COLOUR
bar.base.BAR_REGULAR_LABEL_PREFIX
bar.base.BAR_SPOT_LABEL_COLOUR
bar.base.BAR_SPOT_LABEL_PREFIX
bar.base.BAR_TRACER_DEFAULT_SETTINGS
bar.base.BAR_TRAMAT_METADATA_TAGNAME
bar.base.BAR_XML_ENCODING
bar.base.BAR_XML_NAMESPACE
bar.base.BAR_XML_NAMESPACE_PREFIX
bar.base.CONF_ALOWED_STRUCTURE_CHARACTERS
bar.base.CONF_DEFAULT_CONTOUR_COLOUR
bar.base.CONF_DEFAULT_CONTOUR_WIDTH
bar.base.CONF_DEFAULT_PATH_ATTRIBUTES
bar.base.CONF_DEFAULT_PATH_ATTRIBUTES_NS
bar.base.CONF_DEFAULT_POTRACE_PROPERTIES
bar.base.CONF_DEFAULT_RENDERING_PROPS
bar.base.CONF_DEFAULT_RENDER_HEIGHT
bar.base.CONF_DEFAULT_RENDER_WIDTH
bar.base.CONF_DEFAULT_SLIDE_TEMPLATE
bar.base.CONF_DEFAULT_TEXT_ATTRIBUTES_NS
bar.base.CONF_DEFAULT_VBRAIN_LABEL_LOC
bar.base.CONF_GAPFILLING_MAXLEVEL
bar.base.CONF_POTRACE_ACCURACY_PARAMETER
bar.base.CONF_POTRACE_HEIGHT_STRING
bar.base.CONF_POTRACE_SVG_RESOLUTION_STRING
bar.base.CONF_POTRACE_WIDTH_STRING
bar.base.CONF_SLIDE_TEMPLATE
bar.base.DEFAULT_MARKER_ATTRIBUTES
bar.base.DEFAULT_TEXT_ELEMENTS_ATTRIBUTES
bar.base.__package__
bar.color.BAR_DEFAULT_H_SPAN
bar.color.BAR_DEFAULT_S
bar.color.BAR_DEFAULT_V
bar.color.__package__
bar.defaults.__package__
bar.defaults.re_CoordinateMarker
bar.defaults.re_CoronalCoord
bar.defaults.re_PointsPair
bar.defaults.re_fontsizepx
bar.defaults.re_number
bar.defaults.re_path
bar.defaults.re_trd
bar.image_process.__package__
bar.mbatParser.__package__
bar.neurolucida.BAR_NL_DEFATULT_OBJ_TYPES
bar.neurolucida.GLOBAL_LABEL_ID
bar.neurolucida.__package__
bar.parsers.__package__
bar.rec.__package__
bar.rec.barreconstructor.BAR_ATLAS_INDEX_FILENAME
bar.rec.barreconstructor.BAR_BRAIN_OUTLINE_PROPS
bar.rec.barreconstructor.BAR_DEFAULT_RECONSTRUCTION_DIR
bar.rec.barreconstructor.BAR_RECONSTRUCTOR_VERSION
bar.rec.barreconstructor.BAR_RENDERER_BACKGROUND
bar.rec.barreconstructor.__package__
bar.rec.barreconstructor.dataImporterFromNumpy
bar.rec.formats.BAR_CACHED_MODEL_MASK
bar.rec.formats.BAR_EXPORT_FORMATS
bar.rec.formats.BAR_EXPORT_FORMAT_INFO
bar.rec.formats.BAR_EXPORT_SCENE_FORMATS
bar.rec.formats.BAR_EXPORT_VOLUME_FORMATS
bar.rec.formats.BAR_MESH_TEMPLATE
bar.rec.formats.BAR_SCENE_TEMPLATE
bar.rec.formats.BAR_TEMPLATE
bar.rec.formats.BAR_VOLUME_TEMPLATE
bar.rec.formats.IMAGE_EXPORT_FORMAT_MASK
bar.rec.formats.SCENE_EXPORT_FORMAT_MASK
bar.rec.formats.__package__
bar.rec.index_holder.__package__
bar.rec.pipeline.BAR_VTK_TRANSFORMATION
bar.rec.pipeline.DISPLAYABLE
bar.rec.pipeline.VTK_PIPELINE
bar.rec.pipeline.__package__
bar.rec.pipeline.barVtkMirror
bar.rec.structure_holder.__package__
bar.rec.thumbnail.__package__
bar.sbaconverter.STRUCTURE_NAME_TEMPLATE
bar.sbaconverter.__package__
bar.slides_aligner.__package__
bar.slides_aligner.api_version
bar.slides_aligner.argv
bar.slides_aligner.builtin_module_names
bar.slides_aligner.byteorder
bar.slides_aligner.copyright
bar.slides_aligner.dont_write_bytecode
bar.slides_aligner.exc_type
bar.slides_aligner.exec_prefix
bar.slides_aligner.executable
bar.slides_aligner.flags
bar.slides_aligner.float_info
bar.slides_aligner.hexversion
bar.slides_aligner.maxint
bar.slides_aligner.maxsize
bar.slides_aligner.maxunicode
bar.slides_aligner.meta_path
bar.slides_aligner.modules
bar.slides_aligner.path
bar.slides_aligner.path_hooks
bar.slides_aligner.path_importer_cache
bar.slides_aligner.platform
bar.slides_aligner.prefix
bar.slides_aligner.py3kwarning
bar.slides_aligner.pydebug
bar.slides_aligner.stderr
bar.slides_aligner.stdin
bar.slides_aligner.stdout
bar.slides_aligner.subversion
bar.slides_aligner.version
bar.slides_aligner.version_info
bar.slides_aligner.warnoptions
bar.svgfix.__package__
bar.svgpathparse.__package__
bar.svgpathparse.pathdefs

[hide private]