Package bar

Submodules

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bar.atlas_indexer: The module provides classes necessary to handle basic CAF dataset index manipulations.
bar.barAllenApiAtlas
bar.barAllenApiAtlasPreprocessor
bar.barAllenApiAtlasSpace
bar.barImageUnderlays
bar.base: The module provides classes necessary to handle basic CAF slide manipulations.
bar.color: The module provides classes necessary to handle basic structure colour processing.
bar.defaults: The module provides global regular expressions.
bar.image_process: The module provides functions to handle basic image processing.
bar.mbatParser: The module provides classes necessary to parse MBAT atlases.
bar.neurolucida
bar.parsers: The module provides classes necessary to convert atlas to CAF dataset.
bar.rec
- bar.rec.barreconstructor: The module provides class necessary to create a reconstruction model from a volume.
- bar.rec.formats: The module provides basic information about availiable export formats.
- bar.rec.index_holder: The module provides a subclass of the barIndexer class necessary to perform structure reconstruction.
- bar.rec.pipeline: The module provides classes necessary to handle basic VTK pipeline manipulation.
- bar.rec.structure_holder: The module provides class necessary to perform structure reconstruction.
- bar.rec.thumbnail: The module provides class necessary to perform thumbnail generation.
bar.sbaconverter: The module provides class necessary to translate data from ScalableBrainAtlas to CAF dataset.
bar.slides_aligner: The module provides functions necessary to rescale and align slides to given reference coordinate system by modyfying transformation matrix for topmost g element.
bar.svgfix: Module or simpylying input SVG file structure.
bar.svgpathparse: Extracted from: simplepath.py functions for digesting paths into a simple list structure

Variables

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__package__ = 'bar'