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Identifier Index
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A
addLabel()
(in
barVectorSlide
)
affineTransform()
(in
barMarker
)
affineTransform()
(in
nlParser
)
addPath()
(in
barTracedSlide
)
affineTransform()
(in
barPath
)
alignToRefMatrix()
(in
barVectorSlide
)
addPaths()
(in
barGenericStructure
)
affineTransform()
(in
barPretracedSlide
)
api_version
(in
bar.slides_aligner
)
addRenderWindow()
(in
barReconstructionModule
)
affineTransform()
(in
barStructureLabel
)
append()
(in
barSlideBackgroundList
)
addSlide()
(in
barIndexerStructureElement
)
affineTransform()
(in
barTracedSlide
)
appendContextActor()
(in
barReconstructionModule
)
addStructures()
(in
barTracedSlide
)
affineTransform()
(in
barVectorSlide
)
args
(in
barParam
)
affineTransform()
(in
barAtlasSlideElement
)
affineTransform()
(in
barNLelement
)
argv
(in
bar.slides_aligner
)
affineTransform()
(in
barGenericStructure
)
affineTransform()
(in
barNLfile
)
atlas_indexer
(in
bar
)
B
background
(in
barReconstructionModule
)
BAR_TEMPLATE
(in
bar.rec.formats
)
barMetadataElement
(in
bar.base
)
bar
BAR_TRACER_DEFAULT_SETTINGS
(in
bar.base
)
barNLcontour
(in
bar.neurolucida
)
BAR_ATLAS_INDEX_FILENAME
(in
bar.rec.barreconstructor
)
BAR_TRAMAT_METADATA_TAGNAME
(in
bar.base
)
barNLelement
(in
bar.neurolucida
)
BAR_BRAIN_OUTLINE_PROPS
(in
bar.rec.barreconstructor
)
BAR_VOLUME_TEMPLATE
(in
bar.rec.formats
)
barNLfile
(in
bar.neurolucida
)
BAR_BREGMA_METADATA_TAGNAME
(in
bar.base
)
BAR_VTK_TRANSFORMATION
(in
bar.rec.pipeline
)
barNLzcoordList
(in
bar.neurolucida
)
BAR_CACHED_MODEL_MASK
(in
bar.rec.formats
)
BAR_XML_ENCODING
(in
bar.base
)
barObject
(in
bar.base
)
BAR_COMMENT_LABEL_COLOUR
(in
bar.base
)
BAR_XML_NAMESPACE
(in
bar.base
)
barParam
(in
bar.rec.pipeline
)
BAR_COMMENT_LABEL_PREFIX
(in
bar.base
)
BAR_XML_NAMESPACE_PREFIX
(in
bar.base
)
barPath
(in
bar.base
)
BAR_CONF_ALLEN_API_ATLAS_ANNOTATION
(in
bar.barAllenApiAtlasPreprocessor
)
barAllenApiAtlas
(in
bar
)
barPipeElem
(in
bar.rec.pipeline
)
BAR_CONF_ALLEN_API_ATLAS_INFO
(in
bar.barAllenApiAtlasPreprocessor
)
barAllenApiAtlas
(in
bar.barAllenApiAtlas
)
barPipeline
(in
bar.rec.pipeline
)
BAR_CONF_ALLEN_API_ATLAS_ONTOLOGY
(in
bar.barAllenApiAtlasPreprocessor
)
barAllenApiAtlasPreprocessor
(in
bar
)
barPipelineXML
(in
bar.rec.pipeline
)
BAR_CONF_ALLEN_API_ATLASES_INDEX
(in
bar.barAllenApiAtlasPreprocessor
)
barAllenApiAtlasPreprocessor
(in
bar.barAllenApiAtlasPreprocessor
)
barPretracedSlide
(in
bar.base
)
BAR_CONF_ALLEN_API_HIERARCHY_FILANEME
(in
bar.barAllenApiAtlasPreprocessor
)
barAllenApiAtlasSpace
(in
bar
)
barPretracedSlideRenderer
(in
bar.base
)
BAR_CONF_ALLEN_API_MAPPING_FILENAME
(in
bar.barAllenApiAtlasPreprocessor
)
barAllenApiAtlasSpace
(in
bar.barAllenApiAtlasSpace
)
barReconstructionModule
(in
bar.rec.barreconstructor
)
BAR_CONF_ALLEN_API_SPACES_DIRNAME
(in
bar.barAllenApiAtlasPreprocessor
)
barAtlasSlideElement
(in
bar.base
)
barreconstructor
(in
bar.rec
)
BAR_CONF_ALLEN_API_VOL_RES_MULTIPLIER
(in
bar.barAllenApiAtlasPreprocessor
)
barBackgroundImageContourSlide
(in
bar.barImageUnderlays
)
barReconstructorIndexer
(in
bar.rec.index_holder
)
BAR_CONF_DEFAULT_ALLEN_API_ATLAS
(in
bar.barAllenApiAtlas
)
barBackgroundImageSlide
(in
bar.barImageUnderlays
)
barReconstructorSlideElem
(in
bar.rec.index_holder
)
BAR_CONF_DEFAULT_ALLEN_API_SPACE
(in
bar.barAllenApiAtlasSpace
)
barBitmapParser
(in
bar.parsers
)
barRegularLabel
(in
bar.base
)
BAR_COORDINATE_MARKER_TEMPLATE
(in
bar.base
)
barBoundingBox
(in
bar.base
)
barSBAParser
(in
bar.sbaconverter
)
BAR_CORONAL_MARKER_TEMPLATE
(in
bar.base
)
barBregmaMetadataElement
(in
bar.base
)
barSlideBackgorundElement
(in
bar.barImageUnderlays
)
BAR_DATA_LOCATION_ELEMENT
(in
bar.base
)
barColor
(in
bar.color
)
barSlideBackgroundList
(in
bar.barImageUnderlays
)
BAR_DEFAULT_GROWLEVEL
(in
bar.base
)
barColorIndexer
(in
bar.color
)
barSlideRenderer
(in
bar.base
)
BAR_DEFAULT_H_SPAN
(in
bar.color
)
barCommentLabel
(in
bar.base
)
barSpotLabel
(in
bar.base
)
BAR_DEFAULT_RECONSTRUCTION_DIR
(in
bar.rec.barreconstructor
)
barCoordinateMarker
(in
bar.base
)
barStructureLabel
(in
bar.base
)
BAR_DEFAULT_S
(in
bar.color
)
barCoronalMarker
(in
bar.base
)
barTextElement
(in
bar.neurolucida
)
BAR_DEFAULT_V
(in
bar.color
)
barExternalParser
(in
bar.parsers
)
barTracedSlide
(in
bar.base
)
BAR_EXPORT_FORMAT_INFO
(in
bar.rec.formats
)
barGenericParser
(in
bar.parsers
)
barTracedSlideRenderer
(in
bar.base
)
BAR_EXPORT_FORMATS
(in
bar.rec.formats
)
barGenericStructure
(in
bar.base
)
barTransfMatrixMetadataElement
(in
bar.base
)
BAR_EXPORT_SCENE_FORMATS
(in
bar.rec.formats
)
barImageUnderlays
(in
bar
)
barVectorParser
(in
bar.parsers
)
BAR_EXPORT_VOLUME_FORMATS
(in
bar.rec.formats
)
barIndexer
(in
bar.atlas_indexer
)
barVectorSlide
(in
bar.base
)
BAR_LABEL_MAX_LENGTH
(in
bar.base
)
barIndexerElement
(in
bar.atlas_indexer
)
barVtkAllFlip
(in
bar.rec.pipeline
)
BAR_MESH_TEMPLATE
(in
bar.rec.formats
)
barIndexerGroupElement
(in
bar.atlas_indexer
)
barVtkMirror
(in
bar.rec.pipeline
)
BAR_NL_DEFATULT_OBJ_TYPES
(in
bar.neurolucida
)
barIndexerObject
(in
bar.atlas_indexer
)
base
(in
bar
)
BAR_RECONSTRUCTOR_VERSION
(in
bar.rec.barreconstructor
)
barIndexerPropertyElement
(in
bar.atlas_indexer
)
bbx
(in
barIndexerStructureElement
)
BAR_REGULAR_LABEL_COLOUR
(in
bar.base
)
barIndexerSlideElement
(in
bar.atlas_indexer
)
bbx
(in
barGenericStructure
)
BAR_REGULAR_LABEL_PREFIX
(in
bar.base
)
barIndexerStructureElement
(in
bar.atlas_indexer
)
bitmapSize
(in
barSlideRenderer
)
BAR_RENDERER_BACKGROUND
(in
bar.rec.barreconstructor
)
barMarker
(in
bar.base
)
boundingBox
(in
barPath
)
BAR_SCENE_TEMPLATE
(in
bar.rec.formats
)
barMarkerElement
(in
bar.neurolucida
)
builtin_module_names
(in
bar.slides_aligner
)
BAR_SPOT_LABEL_COLOUR
(in
bar.base
)
barMbatLabel
(in
bar.mbatParser
)
byteorder
(in
bar.slides_aligner
)
BAR_SPOT_LABEL_PREFIX
(in
bar.base
)
barMBATParser
(in
bar.mbatParser
)
C
calculateAlignmentMatrix()
(in
bar.slides_aligner
)
color
(in
barPath
)
CONF_DEFAULT_TEXT_ATTRIBUTES_NS
(in
bar.base
)
calculateTransfFromMarkers()
(in
bar.slides_aligner
)
color
(in
bar
)
CONF_DEFAULT_VBRAIN_LABEL_LOC
(in
bar.base
)
cameraPosition
(in
barReconstructionModule
)
colorMapping
(in
barIndexer
)
CONF_GAPFILLING_MAXLEVEL
(in
bar.base
)
cameraViewUp
(in
barReconstructionModule
)
CONF_ALIGNER_REFERENCE_COORDS
(in
bar.atlas_indexer
)
CONF_HIERARCHY_ROOT_NAME
(in
bar.atlas_indexer
)
Caption
(in
barStructureLabel
)
CONF_ALOWED_STRUCTURE_CHARACTERS
(in
bar.base
)
CONF_POTRACE_ACCURACY_PARAMETER
(in
bar.base
)
castLabelType()
(in
barStructureLabel
)
CONF_DEFAULT_BACKGROUND_ATTRIBUTES
(in
bar.barImageUnderlays
)
CONF_POTRACE_HEIGHT_STRING
(in
bar.base
)
castToCommentLabel()
(in
barStructureLabel
)
CONF_DEFAULT_BACKGROUND_ATTRIBUTES_NS
(in
bar.barImageUnderlays
)
CONF_POTRACE_SVG_RESOLUTION_STRING
(in
bar.base
)
castToSpotLabel()
(in
barStructureLabel
)
CONF_DEFAULT_BACKGROUND_LIST
(in
bar.barImageUnderlays
)
CONF_POTRACE_WIDTH_STRING
(in
bar.base
)
chunks()
(in
bar.svgpathparse
)
CONF_DEFAULT_BACKGROUND_LIST_NS
(in
bar.barImageUnderlays
)
CONF_SLIDE_TEMPLATE
(in
bar.base
)
CleanFilename()
(in
bar.base
)
CONF_DEFAULT_CONTOUR_COLOUR
(in
bar.base
)
contourize()
(in
barTracedSlideRenderer
)
cleanPotraceOutput()
(in
bar.base
)
CONF_DEFAULT_CONTOUR_WIDTH
(in
bar.base
)
copyright
(in
bar.slides_aligner
)
cleanStructName()
(in
bar.barAllenApiAtlasPreprocessor
)
CONF_DEFAULT_PATH_ATTRIBUTES
(in
bar.base
)
coronalcoord
(in
barIndexerSlideElement
)
cleanStructName()
(in
bar.sbaconverter
)
CONF_DEFAULT_PATH_ATTRIBUTES_NS
(in
bar.base
)
createFlatHierarchy()
(in
barIndexer
)
cleanup()
(in
barAllenApiAtlasPreprocessor
)
CONF_DEFAULT_POTRACE_PROPERTIES
(in
bar.base
)
crispEdges
(in
barGenericStructure
)
clearProperties()
(in
barIndexer
)
CONF_DEFAULT_RENDER_HEIGHT
(in
bar.base
)
crispEdges
(in
barPath
)
clearScene()
(in
barReconstructionModule
)
CONF_DEFAULT_RENDER_WIDTH
(in
bar.base
)
crispEdges
(in
barTracedSlide
)
clearVolume()
(in
barReconstructionModule
)
CONF_DEFAULT_RENDERING_PROPS
(in
bar.base
)
color
(in
barGenericStructure
)
CONF_DEFAULT_SLIDE_TEMPLATE
(in
bar.base
)
D
dataImporterFromNumpy
(in
bar.rec.barreconstructor
)
defaults
(in
bar
)
DISPLAYABLE
(in
bar.rec.pipeline
)
datePublished
(in
barAllenApiAtlas
)
defineSpan()
(in
barReconstructorSlideElem
)
displayable()
(in
barPipeline
)
debugOutput()
(in
bar.base
)
deleteLabelByCaption()
(in
barVectorSlide
)
distance_transform()
(in
bar.image_process
)
DEFAULT_MARKER_ATTRIBUTES
(in
bar.base
)
deleteLabelByID()
(in
barVectorSlide
)
dont_write_bytecode
(in
bar.slides_aligner
)
DEFAULT_TEXT_ELEMENTS_ATTRIBUTES
(in
bar.base
)
description
(in
barSlideBackgorundElement
)
E
elements
(in
barPipeline
)
exportThumbnail()
(in
barReconstructionModule
)
exportToVTKPolydata()
(in
barReconstructionModule
)
exc_type
(in
bar.slides_aligner
)
exportToNiftii()
(in
barReconstructionModule
)
exportToX3d()
(in
barReconstructionModule
)
exec_prefix
(in
bar.slides_aligner
)
exportToNumpy()
(in
barReconstructionModule
)
extend()
(in
barSlideBackgroundList
)
executable
(in
bar.slides_aligner
)
exportToPOVRay()
(in
barReconstructionModule
)
extend()
(in
barBoundingBox
)
execute()
(in
barPipeline
)
exportToSTL()
(in
barReconstructionModule
)
extractBoundingBox()
(in
bar.svgpathparse
)
exportPipeline()
(in
barReconstructionModule
)
exportToVolume()
(in
barReconstructionModule
)
exportScreenshot()
(in
barReconstructionModule
)
exportToVRML()
(in
barReconstructionModule
)
F
fill
(in
barIndexerGroupElement
)
fromInt()
(in
barColor
)
fromXML()
(in
barAtlasSlideElement
)
findDuplicatedRegions()
(in
barTracedSlide
)
fromPathDefinition()
(in
barBoundingBox
)
fromXML()
(in
barMarker
)
fixOrphanStructures()
(in
barIndexer
)
fromPathElement()
(in
barBoundingBox
)
fromXML()
(in
barMetadataElement
)
fixPathDefinition()
(in
bar.svgfix
)
fromXML()
(in
barIndexer
)
fromXML()
(in
barPath
)
fixSvgImage()
(in
bar.svgfix
)
fromXML()
(in
barIndexerElement
)
fromXML()
(in
barPretracedSlide
)
flags
(in
bar.slides_aligner
)
fromXML()
(in
barIndexerGroupElement
)
fromXML()
(in
barStructureLabel
)
flatten()
(in
bar.base
)
fromXML()
(in
barIndexerObject
)
fromXML()
(in
barTracedSlide
)
float_info
(in
bar.slides_aligner
)
fromXML()
(in
barIndexerPropertyElement
)
fromXML()
(in
barReconstructorIndexer
)
floatColourToInt()
(in
bar.color
)
fromXML()
(in
barIndexerSlideElement
)
fromXML()
(in
barParam
)
floodFillScanlineStack()
(in
bar.image_process
)
fromXML()
(in
barIndexerStructureElement
)
fromXML()
(in
barPipeElem
)
formats
(in
bar.rec
)
fromXML()
(in
barAllenApiAtlas
)
fromXML()
(in
barPipeline
)
formatStyle()
(in
bar.svgpathparse
)
fromXML()
(in
barAllenApiAtlasSpace
)
fullname
(in
barIndexerGroupElement
)
fromHSVTuple()
(in
barColor
)
fromXML()
(in
barSlideBackgorundElement
)
fullNameMapping
(in
barIndexer
)
fromHTML()
(in
barColor
)
fromXML()
(in
barSlideBackgroundList
)
G
generateLabels()
(in
barTracedSlideRenderer
)
getRegularLabels()
(in
barVectorSlide
)
getXMLelement()
(in
barIndexerStructureElement
)
getBarPath()
(in
barNLcontour
)
getSlide()
(in
barNLfile
)
getXMLelement()
(in
barBackgroundImageContourSlide
)
getBestLabelLocation()
(in
bar.image_process
)
getSlideMassCenter()
(in
barTracedSlideRenderer
)
getXMLelement()
(in
barBackgroundImageSlide
)
getChildList()
(in
barIndexerGroupElement
)
getSlidesSpan()
(in
barReconstructorIndexer
)
getXMLelement()
(in
barSlideBackgroundList
)
getCommentLabels()
(in
barVectorSlide
)
getSlidesSpan()
(in
structureHolder
)
getXMLelement()
(in
barAtlasSlideElement
)
getContextActorOpacity()
(in
barReconstructionModule
)
getSlideTemplate()
(in
bar.base
)
getXMLelement()
(in
barCoordinateMarker
)
getDefaultZres()
(in
barReconstructorIndexer
)
getSpan()
(in
barColorIndexer
)
getXMLelement()
(in
barCoronalMarker
)
getDefaultZres()
(in
structureHolder
)
getSpotLabels()
(in
barVectorSlide
)
getXMLelement()
(in
barGenericStructure
)
getDictionaryFromFile()
(in
bar.base
)
getStructureList()
(in
barReconstructorIndexer
)
getXMLelement()
(in
barMarker
)
getElementById()
(in
barObject
)
getStructureNameIterator()
(in
barIndexerGroupElement
)
getXMLelement()
(in
barMetadataElement
)
getFormatInfo()
(in
bar.rec.formats
)
getStructuresListBbx()
(in
barReconstructorIndexer
)
getXMLelement()
(in
barObject
)
getHierarchyTree()
(in
barReconstructorIndexer
)
getStructuresSubset()
(in
barTracedSlideRenderer
)
getXMLelement()
(in
barPretracedSlide
)
getLabel()
(in
barMarkerElement
)
getThickness()
(in
barReconstructorSlideElem
)
getXMLelement()
(in
barStructureLabel
)
getLabel()
(in
barTextElement
)
getthumbnail()
(in
Thumbnail
)
getXMLelement()
(in
barTracedSlide
)
getLabelByName()
(in
barVectorSlide
)
getTransformationMatrix()
(in
bar.slides_aligner
)
getXMLelement()
(in
barPipeline
)
getMask()
(in
barTracedSlideRenderer
)
getTransformMatrix()
(in
bar.svgfix
)
getXMLelement()
(in
barPipelineXML
)
getMetadataTuple()
(in
barMetadataElement
)
getUIDsForGivenGroupName()
(in
barReconstructorIndexer
)
getZOriginAndExtent()
(in
barReconstructorIndexer
)
getNameFullNameUid()
(in
barIndexerGroupElement
)
getVisibleGroupIterator()
(in
barIndexerGroupElement
)
gid
(in
barIndexer
)
getNameUidChildList()
(in
barIndexerGroupElement
)
getXMLelement()
(in
barIndexer
)
GLOBAL_LABEL_ID
(in
bar.neurolucida
)
GetOutput()
(in
barVtkAllFlip
)
getXMLelement()
(in
barIndexerElement
)
groups
(in
barIndexer
)
getOutputDataTypes()
(in
barPipeline
)
getXMLelement()
(in
barIndexerGroupElement
)
growlevel
(in
barPath
)
getProperty()
(in
barGenericParser
)
getXMLelement()
(in
barIndexerSlideElement
)
growlevel
(in
barStructureLabel
)
H
handleAllModelGeneration()
(in
structureHolder
)
hexversion
(in
bar.slides_aligner
)
hsv
(in
barColor
)
has_key()
(in
barTracedSlide
)
hierarchy
(in
barIndexer
)
html
(in
barColor
)
hasContextActor()
(in
barReconstructionModule
)
hierarchyRootElementName
(in
barIndexer
)
HTMLColorToRGB()
(in
bar.rec.barreconstructor
)
I
id
(in
barIndexerGroupElement
)
image_process
(in
bar
)
intColourToFloat()
(in
bar.color
)
id
(in
barAllenApiAtlas
)
imageLink
(in
barSlideBackgorundElement
)
items()
(in
barGenericStructure
)
id
(in
barSlideBackgorundElement
)
index()
(in
barSlideBackgroundList
)
items()
(in
barTracedSlide
)
id
(in
barSlideBackgroundList
)
index()
(in
barPipeline
)
iteritems()
(in
barGenericStructure
)
id
(in
barPath
)
index_holder
(in
bar.rec
)
iterkeys()
(in
barGenericStructure
)
ID
(in
barStructureLabel
)
indexSingleSlide()
(in
barIndexer
)
itervalues()
(in
barGenericStructure
)
IMAGE_EXPORT_FORMAT_MASK
(in
bar.rec.formats
)
insert()
(in
barSlideBackgroundList
)
K
keys()
(in
barGenericStructure
)
keys()
(in
barTracedSlide
)
L
labelIndex
(in
barVectorSlide
)
lexPath()
(in
bar.svgpathparse
)
Location
(in
barStructureLabel
)
labels
(in
barVectorSlide
)
loadVolume()
(in
VTKStructuredPoints
)
M
makeAlignment()
(in
bar.slides_aligner
)
mbatParser
(in
bar
)
modality
(in
barSlideBackgorundElement
)
massCentre()
(in
bar.image_process
)
mergeBoundingBox()
(in
bar.svgpathparse
)
modifyContour()
(in
bar.svgpathparse
)
maxint
(in
bar.slides_aligner
)
meta_path
(in
bar.slides_aligner
)
modifyContours()
(in
barPretracedSlide
)
maxsize
(in
bar.slides_aligner
)
metadata
(in
barVectorSlide
)
modules
(in
bar.slides_aligner
)
maxunicode
(in
bar.slides_aligner
)
minAppVersion
(in
barAllenApiAtlas
)
N
name
(in
barIndexerGroupElement
)
name
(in
barGenericStructure
)
nlParser
(in
bar.neurolucida
)
name
(in
barIndexerStructureElement
)
name
(in
barMetadataElement
)
nondisplayable()
(in
barPipeline
)
name
(in
barAllenApiAtlas
)
neurolucida
(in
bar
)
normaliseIDs()
(in
barIndexer
)
name
(in
barAllenApiAtlasSpace
)
nextSibling()
(in
barIndexerGroupElement
)
O
opacity
(in
barSlideBackgorundElement
)
open()
(in
Thumbnail
)
outputDataType
(in
barPipeElem
)
P
parallelProjection
(in
barReconstructionModule
)
parsers
(in
bar
)
platform
(in
bar.slides_aligner
)
parse()
(in
barMBATParser
)
parseStyle()
(in
bar.svgpathparse
)
pop()
(in
barSlideBackgroundList
)
parse()
(in
nlParser
)
path
(in
bar.slides_aligner
)
position
(in
barSlideBackgorundElement
)
parse()
(in
barBitmapParser
)
path_hooks
(in
bar.slides_aligner
)
prefix
(in
bar.slides_aligner
)
parse()
(in
barExternalParser
)
path_importer_cache
(in
bar.slides_aligner
)
preparation
(in
barSlideBackgorundElement
)
parse()
(in
barGenericParser
)
pathDef
(in
barPath
)
prepareVolume()
(in
VTKStructuredPoints
)
parse()
(in
barVectorParser
)
pathDefinition
(in
barNLcontour
)
prevSibling()
(in
barIndexerGroupElement
)
parse()
(in
barSBAParser
)
pathdefs
(in
bar.svgpathparse
)
printHierarchyTree()
(in
barIndexerGroupElement
)
parseAll()
(in
barMBATParser
)
pathIndex
(in
barTracedSlide
)
processAtlas()
(in
barAllenApiAtlasPreprocessor
)
parseAll()
(in
barGenericParser
)
paths
(in
barGenericStructure
)
processMarkers()
(in
bar.base
)
parseAll()
(in
barVectorParser
)
paths
(in
barTracedSlide
)
processVolume()
(in
barAllenApiAtlasPreprocessor
)
parseMarkers()
(in
barPretracedSlide
)
performTracing()
(in
bar.image_process
)
properties
(in
barIndexer
)
parsePath()
(in
bar.svgpathparse
)
pipeline
(in
barReconstructionModule
)
py3kwarning
(in
bar.slides_aligner
)
parseRange()
(in
barGenericParser
)
pipeline
(in
bar.rec
)
pydebug
(in
bar.slides_aligner
)
Q
qdist()
(in
bar.rec.index_holder
)
R
re_CoordinateMarker
(in
bar.defaults
)
recolor()
(in
barColorIndexer
)
removeContextActor()
(in
barReconstructionModule
)
re_CoronalCoord
(in
bar.defaults
)
refCords
(in
barReconstructorIndexer
)
renameLabelByCaption()
(in
barVectorSlide
)
re_fontsizepx
(in
bar.defaults
)
refreshRenderWindow()
(in
barReconstructionModule
)
renderPath()
(in
barTracedSlideRenderer
)
re_number
(in
bar.defaults
)
reindex()
(in
barMBATParser
)
renderSlide()
(in
barSlideRenderer
)
re_path
(in
bar.defaults
)
reindex()
(in
barGenericParser
)
renderStructureList()
(in
barTracedSlideRenderer
)
re_PointsPair
(in
bar.defaults
)
relLabelID
(in
barPath
)
retypeLabelByCaption()
(in
barVectorSlide
)
re_trd
(in
bar.defaults
)
remove()
(in
barSlideBackgroundList
)
rgb
(in
barColor
)
rec
(in
bar
)
remove()
(in
barPipeline
)
RGBtoHSVcolor()
(in
bar.color
)
recolor()
(in
barTracedSlide
)
remove_accents()
(in
bar.atlas_indexer
)
RGBToHTMLColor()
(in
barGenericParser
)
S
saveVolume()
(in
VTKStructuredPoints
)
Show()
(in
barVectorSlide
)
stdin
(in
bar.slides_aligner
)
savitzky_golay()
(in
bar.image_process
)
simplifyPathDef()
(in
barPath
)
stdout
(in
bar.slides_aligner
)
sbaconverter
(in
bar
)
size
(in
barAllenApiAtlas
)
structName
(in
barPath
)
SCENE_EXPORT_FORMAT_MASK
(in
bar.rec.formats
)
size
(in
barSlideBackgorundElement
)
structure
(in
barIndexerGroupElement
)
selectBestGapFillingLevel()
(in
bar.image_process
)
size
(in
barSlideRenderer
)
structure_holder
(in
bar.rec
)
set()
(in
barPipeElem
)
slideList
(in
barIndexerStructureElement
)
STRUCTURE_NAME_TEMPLATE
(in
bar.sbaconverter
)
setColorMappingFromFile()
(in
barIndexer
)
slideNumber
(in
barIndexerSlideElement
)
structureHolder
(in
bar.rec.structure_holder
)
setColors()
(in
barColorIndexer
)
slideRange
(in
barNLfile
)
structures
(in
barIndexer
)
setContextActorTransparent()
(in
barReconstructionModule
)
slideRange
(in
nlParser
)
structures
(in
barTracedSlide
)
SetInput()
(in
barVtkAllFlip
)
slides
(in
barIndexer
)
subversion
(in
bar.slides_aligner
)
setNameMappingFromFile()
(in
barIndexer
)
slides_aligner
(in
bar
)
svg2srs()
(in
barVectorSlide
)
setOrigin()
(in
VTKStructuredPoints
)
slideSpan
(in
barIndexerStructureElement
)
svgDocument
(in
barPretracedSlide
)
setParentsFromFile()
(in
barIndexer
)
slideTemplate
(in
barVectorSlide
)
svgDocument
(in
barTracedSlide
)
setProperty()
(in
barGenericParser
)
sourceXmlFilename
(in
barAllenApiAtlasSpace
)
svgfix
(in
bar
)
setReconstructionSource()
(in
barReconstructionModule
)
spatialLocation
(in
barMarker
)
svgLocation
(in
barMarker
)
setSlices()
(in
VTKStructuredPoints
)
srs2svg()
(in
barVectorSlide
)
svgpathparse
(in
bar
)
setSpacing()
(in
VTKStructuredPoints
)
stderr
(in
bar.slides_aligner
)
T
thumbnail
(in
bar.rec
)
tonpArray()
(in
bar.image_process
)
type
(in
barIndexerPropertyElement
)
Thumbnail
(in
bar.rec.thumbnail
)
trace()
(in
barBackgroundImageContourSlide
)
type
(in
barIndexerStructureElement
)
tissueVolumeOrigin
(in
barAllenApiAtlasSpace
)
trace()
(in
barPretracedSlideRenderer
)
type
(in
barGenericStructure
)
tissueVolumePixelSpacing
(in
barAllenApiAtlasSpace
)
transformationmatrix
(in
barIndexerSlideElement
)
type
(in
barPath
)
tissueVolumeSize
(in
barAllenApiAtlasSpace
)
transformPoint()
(in
bar.svgfix
)
U
uid
(in
barIndexer
)
unfoldSubtrees()
(in
barIndexer
)
updateProperties()
(in
barIndexer
)
uid
(in
barIndexerGroupElement
)
UnparsePath()
(in
bar.svgpathparse
)
updateRenderWindow()
(in
barReconstructionModule
)
uid
(in
barIndexerStructureElement
)
Update()
(in
barVtkAllFlip
)
url
(in
barAllenApiAtlas
)
uidList
(in
barIndexer
)
updateMetadata()
(in
barVectorSlide
)
uidList
(in
barIndexerGroupElement
)
updatePaths()
(in
barGenericStructure
)
V
validateStructureName()
(in
bar.base
)
version
(in
barAllenApiAtlas
)
vtkclass
(in
barPipeElem
)
value
(in
barIndexerPropertyElement
)
version
(in
bar.slides_aligner
)
vtkMesh
(in
barReconstructionModule
)
value
(in
barMetadataElement
)
version_info
(in
bar.slides_aligner
)
VTKStructuredPoints
(in
bar.rec.structure_holder
)
values()
(in
barGenericStructure
)
viewVolumePixelSpacing
(in
barAllenApiAtlasSpace
)
VTKtoNumpy()
(in
bar.rec.barreconstructor
)
values()
(in
barPretracedSlide
)
viewVolumeSize
(in
barAllenApiAtlasSpace
)
vtkVolume
(in
barReconstructionModule
)
values()
(in
barSlideRenderer
)
visibleGroups()
(in
barIndexer
)
values()
(in
barTracedSlide
)
VTK_PIPELINE
(in
bar.rec.pipeline
)
W
warnoptions
(in
bar.slides_aligner
)
writeIndex()
(in
barGenericParser
)
writeXMLtoFile()
(in
barObject
)
_
__add__()
(in
barBoundingBox
)
__initializeVolume()
(in
structureHolder
)
_fromXML_LoadLabels()
(in
barTracedSlide
)
__add__()
(in
barTracedSlide
)
__initModelGeneration()
(in
structureHolder
)
_fromXML_LoadMetadata()
(in
barVectorSlide
)
__addGroup()
(in
barIndexer
)
__isAllowedForFilling()
(in
barPretracedSlideRenderer
)
_fromXML_LoadPaths()
(in
barPretracedSlide
)
__addPath()
(in
barTracedSlide
)
__isOutsideBrainOutline()
(in
barPretracedSlideRenderer
)
_fromXML_LoadStructures()
(in
barTracedSlide
)
__affineTransform()
(in
barGenericStructure
)
__isOverContour()
(in
barPretracedSlideRenderer
)
_fromXML_ParseXML()
(in
barVectorSlide
)
__affineTransform()
(in
barMarker
)
__iter__()
(in
barBoundingBox
)
_generateLabelIndex()
(in
barVectorSlide
)
__affineTransform()
(in
barPath
)
__len__()
(in
barGenericStructure
)
_get_datePublished()
(in
barAllenApiAtlas
)
__affineTransform()
(in
barPretracedSlide
)
__len__()
(in
barTracedSlide
)
_get_id()
(in
barAllenApiAtlas
)
__affineTransform()
(in
barStructureLabel
)
__loadAtlasFile()
(in
barMBATParser
)
_get_minAppVersion()
(in
barAllenApiAtlas
)
__affineTransform()
(in
barTracedSlide
)
__loadImage()
(in
barPretracedSlideRenderer
)
_get_name()
(in
barAllenApiAtlas
)
__affineTransform()
(in
barVectorSlide
)
__loadVolume()
(in
barMBATParser
)
_get_name()
(in
barAllenApiAtlasSpace
)
__affineTransform()
(in
barNLfile
)
__merge()
(in
barBoundingBox
)
_get_size()
(in
barAllenApiAtlas
)
__affineTransformObjects()
(in
barNLfile
)
__mul__()
(in
barBoundingBox
)
_get_sourceXmlFilename()
(in
barAllenApiAtlasSpace
)
__applyFill()
(in
barPretracedSlideRenderer
)
__ne__()
(in
barBoundingBox
)
_get_tissueVolumeOrigin()
(in
barAllenApiAtlasSpace
)
__bitmapToPaths()
(in
barPretracedSlideRenderer
)
__normaliseIDs()
(in
barIndexer
)
_get_tissueVolumePixelSpacing()
(in
barAllenApiAtlasSpace
)
__calcOriginAndSpacing()
(in
structureHolder
)
__package__
(in
bar
)
_get_tissueVolumeSize()
(in
barAllenApiAtlasSpace
)
__call__()
(in
barColor
)
__package__
(in
bar.atlas_indexer
)
_get_url()
(in
barAllenApiAtlas
)
__call__()
(in
barPipeElem
)
__package__
(in
bar.barAllenApiAtlas
)
_get_version()
(in
barAllenApiAtlas
)
__clearAfterTracing()
(in
barPretracedSlideRenderer
)
__package__
(in
bar.barAllenApiAtlasPreprocessor
)
_get_viewVolumePixelSpacing()
(in
barAllenApiAtlasSpace
)
__clearCache()
(in
barReconstructionModule
)
__package__
(in
bar.barAllenApiAtlasSpace
)
_get_viewVolumeSize()
(in
barAllenApiAtlasSpace
)
__createCache()
(in
barPretracedSlideRenderer
)
__package__
(in
bar.barImageUnderlays
)
_getAnnotationsFilename()
(in
barAllenApiAtlasPreprocessor
)
__createExportByExt()
(in
barReconstructionModule
)
__package__
(in
bar.base
)
_getAttributesDict()
(in
barObject
)
__createMainActor()
(in
barReconstructionModule
)
__package__
(in
bar.color
)
_getBbox()
(in
barGenericStructure
)
__createZindex()
(in
barNLfile
)
__package__
(in
bar.defaults
)
_getBbox()
(in
barPath
)
__defineAxesFlips()
(in
barReconstructorIndexer
)
__package__
(in
bar.image_process
)
_getColor()
(in
barPath
)
__defineOriginAndSpacing()
(in
structureHolder
)
__package__
(in
bar.mbatParser
)
_getContentString()
(in
barMetadataElement
)
__defineSpan()
(in
barReconstructorIndexer
)
__package__
(in
bar.neurolucida
)
_getContentString()
(in
barTransfMatrixMetadataElement
)
__defineTransformationMatrix()
(in
bar.svgfix
)
__package__
(in
bar.parsers
)
_getCorrespondingLabelID()
(in
barPath
)
__delitem__()
(in
barGenericStructure
)
__package__
(in
bar.rec
)
_getCorrespondingStructureName()
(in
barPath
)
__delitem__()
(in
barPretracedSlide
)
__package__
(in
bar.rec.barreconstructor
)
_getDescription()
(in
barSlideBackgorundElement
)
__delitem__()
(in
barTracedSlide
)
__package__
(in
bar.rec.formats
)
_getFeatureType()
(in
barGenericStructure
)
__dumpWrongSeed()
(in
barPretracedSlideRenderer
)
__package__
(in
bar.rec.index_holder
)
_getGrowlevel()
(in
barPath
)
__eq__()
(in
barBoundingBox
)
__package__
(in
bar.rec.pipeline
)
_getHierarchyFilename()
(in
barAllenApiAtlasPreprocessor
)
__executeElement()
(in
barPipeline
)
__package__
(in
bar.rec.structure_holder
)
_getId()
(in
barSlideBackgorundElement
)
__exportToVtkDataExporter()
(in
barReconstructionModule
)
__package__
(in
bar.rec.thumbnail
)
_getId()
(in
barSlideBackgroundList
)
__exportToVtkExporter()
(in
barReconstructionModule
)
__package__
(in
bar.sbaconverter
)
_getID()
(in
barPath
)
__extractHierarchy()
(in
barMBATParser
)
__package__
(in
bar.slides_aligner
)
_getImage()
(in
barSlideBackgorundElement
)
__extractImageElement()
(in
barNLfile
)
__package__
(in
bar.svgfix
)
_getIndexerRefMatrix()
(in
barMBATParser
)
__fixElement()
(in
bar.svgfix
)
__package__
(in
bar.svgpathparse
)
_getIndexFilename()
(in
barGenericParser
)
__fixHeader()
(in
bar.svgfix
)
__parsePropertyElement()
(in
barNLelement
)
_getInfoFilename()
(in
barAllenApiAtlasPreprocessor
)
__fixLine()
(in
bar.svgfix
)
__processContours()
(in
barNLfile
)
_getInputFilename()
(in
barVectorParser
)
__fixPath()
(in
bar.svgfix
)
__processDuplicates()
(in
barTracedSlide
)
_getLabels()
(in
barVectorSlide
)
__fixPathDefinition()
(in
bar.svgfix
)
__processLabels()
(in
barPretracedSlideRenderer
)
_getMappingsFilename()
(in
barAllenApiAtlasPreprocessor
)
__fixPolygon()
(in
bar.svgfix
)
__processMarkers()
(in
barNLfile
)
_getMetadata()
(in
barVectorSlide
)
__fixPolyline()
(in
bar.svgfix
)
__processModelGeneration()
(in
structureHolder
)
_getName()
(in
barMetadataElement
)
__fixText()
(in
bar.svgfix
)
__processSingleLabel()
(in
barPretracedSlideRenderer
)
_getNewPathID()
(in
barPretracedSlideRenderer
)
__flushCache()
(in
structureHolder
)
__processSingleSlide()
(in
structureHolder
)
_getNewPathID()
(in
barMBATParser
)
__fromXML()
(in
barIndexer
)
__processTextElems()
(in
barNLfile
)
_getNewPathID()
(in
barBitmapParser
)
__fromXML()
(in
barPipeline
)
__processVbrain()
(in
barPretracedSlideRenderer
)
_getOntologyFilename()
(in
barAllenApiAtlasPreprocessor
)
__generateLabelLocation()
(in
barTracedSlideRenderer
)
__removeMainActor()
(in
barReconstructionModule
)
_getOpacity()
(in
barSlideBackgorundElement
)
__generateorder()
(in
barPipeline
)
__restrictiveValidation()
(in
barNLcontour
)
_getOutputFilename()
(in
barGenericParser
)
__generatePathIndex()
(in
barTracedSlide
)
__roundZcoord()
(in
barNLfile
)
_getOutputLabeledVolumeFilename()
(in
barAllenApiAtlasPreprocessor
)
__getAllLabelsWithType()
(in
barVectorSlide
)
__setArgs()
(in
barParam
)
_getPath()
(in
barPretracedSlideRenderer
)
__getArgs()
(in
barParam
)
__setBackground()
(in
barReconstructionModule
)
_getPath()
(in
barBitmapParser
)
__getBackground()
(in
barReconstructionModule
)
__setBbx()
(in
barIndexerStructureElement
)
_getPathDefinition()
(in
barPath
)
__getBbx()
(in
barIndexerStructureElement
)
__setBitmapSize()
(in
barSlideRenderer
)
_getPathID()
(in
barSBAParser
)
__getBitmapSize()
(in
barSlideRenderer
)
__setCameraPosition()
(in
barReconstructionModule
)
_getPaths()
(in
barGenericStructure
)
__getCameraPosition()
(in
barReconstructionModule
)
__setCameraViewUp()
(in
barReconstructionModule
)
_getPaths()
(in
barTracedSlide
)
__getCameraViewUp()
(in
barReconstructionModule
)
__setCaption()
(in
barStructureLabel
)
_getPathType()
(in
barPath
)
__getCaption()
(in
barStructureLabel
)
__setChildColours()
(in
barColorIndexer
)
_getPosition()
(in
barSlideBackgorundElement
)
__getCls()
(in
barPipeElem
)
__setCls()
(in
barPipeElem
)
_getPreparation()
(in
barSlideBackgorundElement
)
__getColorMapping()
(in
barIndexer
)
__setColorMapping()
(in
barIndexer
)
_getSibling()
(in
barIndexerGroupElement
)
__getCoronalCoord()
(in
barIndexerSlideElement
)
__setContourColor()
(in
barPretracedSlideRenderer
)
_getSingle()
(in
barPipelineXML
)
__getCoveredAreasList()
(in
barPretracedSlideRenderer
)
__setCoronalCoord()
(in
barIndexerSlideElement
)
_getSingleNested()
(in
barPipelineXML
)
__getCrispEdges()
(in
barGenericStructure
)
__setCrispEdges()
(in
barGenericStructure
)
_getSize()
(in
barSlideBackgorundElement
)
__getCrispEdges()
(in
barPath
)
__setCrispEdges()
(in
barPath
)
_getSlide()
(in
barBitmapParser
)
__getCrispEdges()
(in
barTracedSlide
)
__setCrispEdges()
(in
barTracedSlide
)
_getSlideTemplate()
(in
barVectorSlide
)
__getElements()
(in
barPipeline
)
__setElements()
(in
barPipeline
)
_getSourceDatasetZipfileName()
(in
barAllenApiAtlasPreprocessor
)
__getFill()
(in
barIndexerGroupElement
)
__setFill()
(in
barIndexerGroupElement
)
_getSourceImage()
(in
barMBATParser
)
__getFlips()
(in
structureHolder
)
__setFullname()
(in
barIndexerGroupElement
)
_getSourceImage()
(in
barBitmapParser
)
__getFullname()
(in
barIndexerGroupElement
)
__setFullNameMapping()
(in
barIndexer
)
_getSpatialLocation()
(in
barMarker
)
__getFullNameMapping()
(in
barIndexer
)
__setGID()
(in
barIndexer
)
_getSpatialTransfMatrix()
(in
barBitmapParser
)
__getGID()
(in
barIndexer
)
__setGID()
(in
barIndexerGroupElement
)
_getStain()
(in
barSlideBackgorundElement
)
__getGID()
(in
barIndexerGroupElement
)
__setGrowlevel()
(in
barStructureLabel
)
_getStructureColor()
(in
barGenericStructure
)
__getGrowlevel()
(in
barStructureLabel
)
__setHierarchy()
(in
barIndexer
)
_getStructureName()
(in
barGenericStructure
)
__getHierarchy()
(in
barIndexer
)
__setHierarchyGroups()
(in
barIndexer
)
_getStructureName()
(in
barSBAParser
)
__getHierarchyGroups()
(in
barIndexer
)
__setHierarchyRoot()
(in
barIndexer
)
_getStructures()
(in
barTracedSlide
)
__getHierarchyRoot()
(in
barIndexer
)
__setID()
(in
barStructureLabel
)
_getSVGLocation()
(in
barMarker
)
__getHSVTuple()
(in
barColor
)
__setInternalData()
(in
barGenericParser
)
_getTextNodeXMLelement()
(in
barAtlasSlideElement
)
__getHTMLcolor()
(in
barColor
)
__setitem__()
(in
barGenericStructure
)
_getUniqeColours()
(in
barBitmapParser
)
__getID()
(in
barStructureLabel
)
__setitem__()
(in
barPretracedSlide
)
_getValue()
(in
barMetadataElement
)
__getInt()
(in
barColor
)
__setitem__()
(in
barTracedSlide
)
_getValue()
(in
barParam
)
__getInternalData()
(in
barGenericParser
)
__setLocation()
(in
barStructureLabel
)
_getZCoord()
(in
barBitmapParser
)
__getIntTuple()
(in
barColor
)
__setName()
(in
barIndexerGroupElement
)
_getZipOutputZipfilename()
(in
barAllenApiAtlasPreprocessor
)
__getitem__()
(in
barSlideBackgroundList
)
__setName()
(in
barIndexerStructureElement
)
_initialIDs
(in
barIndexer
)
__getitem__()
(in
barBoundingBox
)
__setOutputDataType()
(in
barPipeElem
)
_listelements
(in
barParam
)
__getitem__()
(in
barGenericStructure
)
__setPathDefinition()
(in
barNLcontour
)
_listelements
(in
barPipeElem
)
__getitem__()
(in
barPretracedSlide
)
__setPipeline()
(in
barReconstructionModule
)
_listelements
(in
barPipeline
)
__getitem__()
(in
barTracedSlide
)
__setProjectionParallel()
(in
barReconstructionModule
)
_listelements
(in
barPipelineXML
)
__getitem__()
(in
barPipeline
)
__setProperty()
(in
barIndexer
)
_loadAtlasSpaces()
(in
barAllenApiAtlasPreprocessor
)
__getLocation()
(in
barStructureLabel
)
__setRefCords()
(in
barReconstructorIndexer
)
_loadjsonfiles()
(in
barSBAParser
)
__getMappedChildList()
(in
barIndexerGroupElement
)
__setSlideList()
(in
barIndexerStructureElement
)
_loadRawAnnotationFile()
(in
barAllenApiAtlasPreprocessor
)
__getMissplacedLabels()
(in
barPretracedSlideRenderer
)
__setSlideNumber()
(in
barIndexerSlideElement
)
_loadSlide()
(in
structureHolder
)
__getName()
(in
barIndexerGroupElement
)
__setSlides()
(in
barIndexer
)
_mergeBoundingBox()
(in
bar.svgpathparse
)
__getName()
(in
barIndexerStructureElement
)
__setSlideSize()
(in
barSlideRenderer
)
_optionalAttributes
(in
barMbatLabel
)
__getOutputDataType()
(in
barPipeElem
)
__setSlideSpan()
(in
barIndexerStructureElement
)
_parse_hex()
(in
bar.mbatParser
)
__getPathDefinition()
(in
barNLcontour
)
__setStructure()
(in
barIndexerGroupElement
)
_parseSingleStructure()
(in
barSBAParser
)
__getPipeline()
(in
barReconstructionModule
)
__setStructures()
(in
barIndexer
)
_parseTracerOutput()
(in
barBitmapParser
)
__getPointCoords()
(in
barNLelement
)
__setTransformationMatrix()
(in
barIndexerSlideElement
)
_performTracing()
(in
barGenericParser
)
__getProjectionParallel()
(in
barReconstructionModule
)
__setType()
(in
barIndexerPropertyElement
)
_prefix
(in
barCommentLabel
)
__getProperties()
(in
barNLelement
)
__setType()
(in
barIndexerStructureElement
)
_prefix
(in
barRegularLabel
)
__getProperty()
(in
barIndexer
)
__setUID()
(in
barIndexer
)
_prefix
(in
barSpotLabel
)
__getRefCords()
(in
barReconstructorIndexer
)
__setUID()
(in
barIndexerGroupElement
)
_prefix
(in
barStructureLabel
)
__getslice__()
(in
barSlideBackgroundList
)
__setUid()
(in
barIndexerStructureElement
)
_printRed()
(in
bar.base
)
__getslice__()
(in
barPipeline
)
__setUidList()
(in
barIndexer
)
_processOntology()
(in
barAllenApiAtlasPreprocessor
)
__getSlideList()
(in
barIndexerStructureElement
)
__setUidList()
(in
barIndexerGroupElement
)
_processSingleOntologyFileLine()
(in
barAllenApiAtlasPreprocessor
)
__getSlideNumber()
(in
barIndexerSlideElement
)
__setValue()
(in
barIndexerPropertyElement
)
_processStructure()
(in
barBitmapParser
)
__getSlideRange()
(in
barNLfile
)
__setVtkMesh()
(in
barReconstructionModule
)
_putscalings()
(in
barSBAParser
)
__getSlideRange()
(in
nlParser
)
__setVtkVolume()
(in
barReconstructionModule
)
_recurseTextNodeExtract()
(in
bar.base
)
__getSlides()
(in
barIndexer
)
__str__()
(in
barBoundingBox
)
_removeWhitespacesXML()
(in
bar.base
)
__getSlideSize()
(in
barSlideRenderer
)
__str__()
(in
barGenericStructure
)
_rename()
(in
barPath
)
__getSlideSpan()
(in
barIndexerStructureElement
)
__str__()
(in
barObject
)
_renderSvgDrawing()
(in
barSlideRenderer
)
__getStructure()
(in
barIndexerGroupElement
)
__str__()
(in
barColor
)
_requiredInternalData
(in
barIndexer
)
__getStructureList()
(in
structureHolder
)
__substractFromBrainOutline()
(in
barPretracedSlideRenderer
)
_requiredInternalData
(in
barMBATParser
)
__getStructures()
(in
barIndexer
)
__transformPoint()
(in
barNLelement
)
_requiredInternalData
(in
nlParser
)
__getTransfomarionMatrix()
(in
barIndexerSlideElement
)
__transformPoint()
(in
bar.svgfix
)
_requiredInternalData
(in
barBitmapParser
)
__getType()
(in
barIndexerPropertyElement
)
__validateBoundingBoxes()
(in
barTracedSlide
)
_requiredInternalData
(in
barGenericParser
)
__getType()
(in
barIndexerStructureElement
)
__validateHierarchy()
(in
barIndexer
)
_requiredInternalData
(in
barVectorParser
)
__getUID()
(in
barIndexer
)
__validateMetadata()
(in
barVectorSlide
)
_requiredInternalData
(in
barSBAParser
)
__getUID()
(in
barIndexerGroupElement
)
_applyTransformCorrection()
(in
bar.slides_aligner
)
_saveBitmap()
(in
barPretracedSlideRenderer
)
__getUid()
(in
barIndexerStructureElement
)
_areNearlyTheSame()
(in
bar.image_process
)
_saveSVG()
(in
barPretracedSlideRenderer
)
__getUidList()
(in
barIndexer
)
_assignHeaderInformation()
(in
barAllenApiAtlasPreprocessor
)
_saveTransformationAsMetadata()
(in
barSBAParser
)
__getUidList()
(in
barIndexerGroupElement
)
_attributes
(in
barAtlasSlideElement
)
_set_datePublished()
(in
barAllenApiAtlas
)
__getUnlabeled()
(in
barPretracedSlideRenderer
)
_attributes
(in
barParam
)
_set_id()
(in
barAllenApiAtlas
)
__getUnlabeledAreas()
(in
barPretracedSlideRenderer
)
_attributes
(in
barPipeElem
)
_set_minAppVersion()
(in
barAllenApiAtlas
)
__getValue()
(in
barIndexerPropertyElement
)
_attributes
(in
barPipelineXML
)
_set_name()
(in
barAllenApiAtlas
)
__getValues()
(in
barColor
)
_attributesNS
(in
barAtlasSlideElement
)
_set_name()
(in
barAllenApiAtlasSpace
)
__getVtkMesh()
(in
barReconstructionModule
)
_calcPathDefinition()
(in
barNLelement
)
_set_size()
(in
barAllenApiAtlas
)
__getVtkVolume()
(in
barReconstructionModule
)
_calculatescaling()
(in
barSBAParser
)
_set_sourceXmlFilename()
(in
barAllenApiAtlasSpace
)
__indexStructures()
(in
barIndexer
)
_calculateSlideSpan()
(in
barReconstructorSlideElem
)
_set_tissueVolumeOrigin()
(in
barAllenApiAtlasSpace
)
__init__()
(in
barIndexer
)
_checkEqualSpacing()
(in
structureHolder
)
_set_tissueVolumePixelSpacing()
(in
barAllenApiAtlasSpace
)
__init__()
(in
barIndexerGroupElement
)
_cleanStructName()
(in
barSBAParser
)
_set_tissueVolumeSize()
(in
barAllenApiAtlasSpace
)
__init__()
(in
barIndexerObject
)
_color
(in
barCommentLabel
)
_set_url()
(in
barAllenApiAtlas
)
__init__()
(in
barIndexerPropertyElement
)
_color
(in
barRegularLabel
)
_set_version()
(in
barAllenApiAtlas
)
__init__()
(in
barIndexerSlideElement
)
_color
(in
barSpotLabel
)
_set_viewVolumePixelSpacing()
(in
barAllenApiAtlasSpace
)
__init__()
(in
barIndexerStructureElement
)
_color
(in
barStructureLabel
)
_set_viewVolumeSize()
(in
barAllenApiAtlasSpace
)
__init__()
(in
barAllenApiAtlas
)
_createMappings()
(in
barReconstructorIndexer
)
_setBbox()
(in
barGenericStructure
)
__init__()
(in
barAllenApiAtlasPreprocessor
)
_createMask()
(in
barMBATParser
)
_setBbox()
(in
barPath
)
__init__()
(in
barAllenApiAtlasSpace
)
_createMask()
(in
barBitmapParser
)
_setColor()
(in
barPath
)
__init__()
(in
barBackgroundImageContourSlide
)
_defaults
(in
barParam
)
_setCorrespondingLabelID()
(in
barPath
)
__init__()
(in
barBackgroundImageSlide
)
_defaults
(in
barPipeElem
)
_setCurrentAtlasSpace()
(in
barAllenApiAtlasPreprocessor
)
__init__()
(in
barSlideBackgorundElement
)
_defineSlideRange()
(in
barMBATParser
)
_setDescription()
(in
barSlideBackgorundElement
)
__init__()
(in
barSlideBackgroundList
)
_downloadAtlas()
(in
barAllenApiAtlasPreprocessor
)
_setFeatureType()
(in
barGenericStructure
)
__init__()
(in
barBoundingBox
)
_elementAttributes
(in
barIndexerElement
)
_setGrowlevel()
(in
barPath
)
__init__()
(in
barBregmaMetadataElement
)
_elementAttributes
(in
barIndexerGroupElement
)
_setHierarchyRelation()
(in
barIndexer
)
__init__()
(in
barGenericStructure
)
_elementAttributes
(in
barIndexerPropertyElement
)
_setId()
(in
barSlideBackgorundElement
)
__init__()
(in
barMarker
)
_elementAttributes
(in
barIndexerSlideElement
)
_setId()
(in
barSlideBackgroundList
)
__init__()
(in
barMetadataElement
)
_elementAttributes
(in
barIndexerStructureElement
)
_setID()
(in
barPath
)
__init__()
(in
barPath
)
_elementAttributes
(in
barMbatLabel
)
_setImage()
(in
barSlideBackgorundElement
)
__init__()
(in
barPretracedSlide
)
_elementName
(in
barIndexerElement
)
_setMetadata()
(in
barVectorSlide
)
__init__()
(in
barSlideRenderer
)
_elementName
(in
barIndexerGroupElement
)
_setOpacity()
(in
barSlideBackgorundElement
)
__init__()
(in
barStructureLabel
)
_elementName
(in
barIndexerPropertyElement
)
_setPathDefinition()
(in
barPath
)
__init__()
(in
barTracedSlide
)
_elementName
(in
barIndexerSlideElement
)
_setPathType()
(in
barPath
)
__init__()
(in
barTransfMatrixMetadataElement
)
_elementName
(in
barIndexerStructureElement
)
_setPosition()
(in
barSlideBackgorundElement
)
__init__()
(in
barVectorSlide
)
_elementName
(in
barAllenApiAtlas
)
_setPreparation()
(in
barSlideBackgorundElement
)
__init__()
(in
barColor
)
_elementName
(in
barAllenApiAtlasSpace
)
_setSize()
(in
barSlideBackgorundElement
)
__init__()
(in
barMBATParser
)
_elementName
(in
barSlideBackgorundElement
)
_setSlideTemplate()
(in
barVectorSlide
)
__init__()
(in
barMbatLabel
)
_elementName
(in
barSlideBackgroundList
)
_setSpatialLocation()
(in
barMarker
)
__init__()
(in
barMarkerElement
)
_elementName
(in
barAtlasSlideElement
)
_setStain()
(in
barSlideBackgorundElement
)
__init__()
(in
barNLcontour
)
_elementName
(in
barMarker
)
_setStructureColor()
(in
barGenericStructure
)
__init__()
(in
barNLelement
)
_elementName
(in
barMetadataElement
)
_setStructureName()
(in
barGenericStructure
)
__init__()
(in
barNLfile
)
_elementName
(in
barPath
)
_setSVGLocation()
(in
barMarker
)
__init__()
(in
barNLzcoordList
)
_elementName
(in
barStructureLabel
)
_setValue()
(in
barMetadataElement
)
__init__()
(in
barTextElement
)
_elementName
(in
barParam
)
_singleelements
(in
barParam
)
__init__()
(in
nlParser
)
_elementName
(in
barPipeElem
)
_singleelements
(in
barPipeElem
)
__init__()
(in
barBitmapParser
)
_elementName
(in
barPipeline
)
_singleelements
(in
barPipelineXML
)
__init__()
(in
barExternalParser
)
_elementName
(in
barPipelineXML
)
_structList2SlideSpan()
(in
barReconstructorIndexer
)
__init__()
(in
barGenericParser
)
_elementsList
(in
barIndexer
)
_toImageCoordinates()
(in
barSlideRenderer
)
__init__()
(in
barVectorParser
)
_fromXML()
(in
barIndexer
)
_toSVGCoordinates()
(in
barSlideRenderer
)
__init__()
(in
barReconstructionModule
)
_fromXML()
(in
barPipeline
)
_updateAvailableAtlases()
(in
barAllenApiAtlasPreprocessor
)
__init__()
(in
barReconstructorIndexer
)
_fromXML_AfterCleanUpHook()
(in
barBackgroundImageContourSlide
)
_validateCaption()
(in
barRegularLabel
)
__init__()
(in
barReconstructorSlideElem
)
_fromXML_AfterCleanUpHook()
(in
barBackgroundImageSlide
)
_validateCaption()
(in
barStructureLabel
)
__init__()
(in
barParam
)
_fromXML_AfterCleanUpHook()
(in
barVectorSlide
)
_validateID()
(in
barPath
)
__init__()
(in
barPipeElem
)
_fromXML_BeforeCleanUpHook()
(in
barBackgroundImageContourSlide
)
_validateInternalData()
(in
barIndexer
)
__init__()
(in
barVtkAllFlip
)
_fromXML_BeforeCleanUpHook()
(in
barBackgroundImageSlide
)
_validateInternalData()
(in
barGenericParser
)
__init__()
(in
VTKStructuredPoints
)
_fromXML_BeforeCleanUpHook()
(in
barVectorSlide
)
_validatePath()
(in
barPath
)
__init__()
(in
structureHolder
)
_fromXML_Cleanup()
(in
barVectorSlide
)
_validateSlideTemplate()
(in
barVectorSlide
)
__init__()
(in
barSBAParser
)
_fromXML_LoadLabels()
(in
barPretracedSlide
)
_validateValue()
(in
barMetadataElement
)
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