################################################ # ITK-SnAP Label Description File # File format: # IDX -R- -G- -B- -A-- VIS MSH LABEL # Fields: # IDX: Zero-based index # -R-: Red color component (0..255) # -G-: Green color component (0..255) # -B-: Blue color component (0..255) # -A-: Label transparency (0.00 .. 1.00) # VIS: Label visibility (0 or 1) # IDX: Label mesh visibility (0 or 1) # LABEL: Label description ################################################ 0 0 0 0 0 0 0 "Clear Label" 1 0 9 255 1 1 1 "Glomelural layer of the olfactory bulb|Gl|OB" 2 66 255 0 1 1 1 "External plexiform layer of the olfactory bulb|EPl|OB" 3 210 104 28 1 1 1 "Granular cell layer of the olfactory bulb|GrO|OB" 4 240 255 240 1 1 1 "Olfactory nerve layer|ON|OB" 5 59 94 238 1 1 1 "Accessory olfactory bulb|AOB|FBr" 6 0 26 253 1 1 1 "Lateral olfactory tract|ol|FBr" 7 255 0 255 1 1 1 "Neocortex|NCtx|FBr" 8 116 234 255 1 1 1 "Piriform cortex|PCtx|FBr" 9 0 139 139 1 1 1 "Entorhinal cortex|ECtx|FBr" 10 220 20 60 1 1 1 "Deep cerebral white matter|dcw|FBr" 11 39 238 217 1 1 1 "Hippocampus-Unsegmented|Hip-U|Hip" 12 34 139 34 1 1 1 "Dentate gyrus|DG|Hip" 13 0 0 255 1 1 1 "Oriens layer of the hippocampus|Or|Hip" 14 7 0 75 1 1 1 "Fimbria of the hippocampus|fi|Hip" 15 255 0 0 1 1 1 "Basal ganglia-Unsegmented|BG-U|FBr" 16 255 255 224 1 1 1 "Septum|S|BG" 17 70 130 180 1 1 1 "Caudate nucleus|Cd|BG" 18 159 45 235 1 1 1 "Putamen|Pu|BG" 19 0 209 39 1 1 1 "Nucleus accumbens|Acb|BG" 20 135 206 235 1 1 1 "Bed nucleus of stria terminalis|ST|BG" 21 255 165 0 1 1 1 "Anterior commissure, anterior limb|aca|FBr" 22 255 192 203 1 1 1 "Anterior commissure|ac|FBr" 23 255 129 0 1 1 1 "Anterior commissure, posterior limb|acp|FBr" 24 230 0 134 1 1 1 "Internal capsule|ic|FBr" 25 255 218 0 1 1 1 "External capsule|ec|FBr" 26 7 52 201 1 1 1 "Amygdala|A|FBr" 27 249 160 130 1 1 1 "Thalamus-Unsegmented|Th-U|Th" 28 210 22 38 1 1 1 "Habenular nucleus|Hb|Th" 29 52 163 255 1 1 1 "Habenular commissure|hbc|Th" 30 255 20 147 1 1 1 "Lateral geniculate nucleus|LGN|Th" 31 255 250 250 1 1 1 "Medial geniculate nucleus|MG|Th" 32 112 128 144 1 1 1 "Hypothalamus-Unsegmented|H-U|H" 33 147 112 219 1 1 1 "Mammillary body|M|H" 34 178 49 21 1 1 1 "Midbrain-Unsegmented|MBr-U|MBr" 35 57 238 140 1 1 1 "Zona and Superficial gray layer of superior colliculus|Zo-SuG|SC" 36 238 44 36 1 1 1 "Optic nerve layer of the superior colliculus|Op|SC" 37 245 222 179 1 1 1 "Intermediate white layer of the superior colliculus|InWh|SC" 38 106 90 205 1 1 1 "Intermediate and Deep gray layer of the superior colliculus|InG-DpG|SC" 39 255 224 0 1 1 1 "Deep white matter superior colliculus|DpWh|SC" 40 255 178 254 1 1 1 "Commissure of the superior colliculus|csc|SC" 41 112 240 197 1 1 1 "Inferior colliculus-Unsegmented|IC-U|IC" 42 250 128 114 1 1 1 "Commissure of the inferior colliculus|cic|IC" 43 156 0 156 1 1 1 "Posterior commissure|pc|MBr" 44 25 25 112 1 1 1 "Dorsal nucleus of lateral lemniscus|DLL|MBr" 45 248 184 75 1 1 1 "Periaqueductal gray|PAG|MBr" 46 218 99 0 1 1 1 "Pons-Unsegmented|PN-U|PN" 47 205 23 110 1 1 1 "Longitudial fasciulus of the pons|lfp|PN" 48 222 51 153 1 1 1 "Median raphe nuclei|MR|PN" 49 218 112 214 1 1 1 "Pontine nucleus|Pn|PN" 50 188 143 143 1 1 1 "Lateral lemniscus|LL|PN" 51 255 228 196 1 1 1 "Olivar nuclei|O|PN" 52 173 255 47 1 1 1 "Motor root of trigeminal nerve|m5|PN" 53 65 105 225 1 1 1 "Interpenduncular nucleus|IP|PN" 54 255 218 185 1 1 1 "Medial lemniscus|ml|MO" 55 0 128 128 1 1 1 "Superior cerebellar peduncle|SCP|PN" 56 0 36 255 1 1 1 "Middle cerebellar peduncle|mcp|PN" 57 0 156 46 1 1 1 "Ventral tegmental nucleus|VTg|PN" 58 252 190 182 1 1 1 "Molecular layer of the cerebellum|1Cer|Cer" 59 231 67 83 1 1 1 "Molecular layer of the paraflocculi|1PFl|Cer" 60 60 101 255 1 1 1 "Granule cell leyer of the cerebellum|GCer|Cer" 61 46 139 87 1 1 1 "Cerebellar white matter|WhCer|Cer" 62 255 244 0 1 1 1 "Medulla oblongata-Unsegmented|MO-U|MO" 63 222 0 202 1 1 1 "Cuneate nucleus|Cu|MO" 64 218 0 6 1 1 1 "Area postrema|AP|MO" 65 92 255 252 1 1 1 "Nuclei of the solitary tract|Sol|MO" 66 39 151 255 1 1 1 "Hypoglossal nucleus and central cervical nucleus|12N|MO" 67 255 105 180 1 1 1 "Cochlear nucleus|CN|MO" 68 255 160 122 1 1 1 "Vestibular nucleus|Ve|MO" 69 144 238 144 1 1 1 "Facial nerve|7n|MO" 70 222 87 0 1 1 1 "Inferior olive|IO|MO" 71 222 0 73 1 1 1 "Pyramidal tract|py|MO" 72 0 72 255 1 1 1 "Facial nucleus|7N|MO" 73 35 42 142 1 1 1 "Gracile nucleus|Gr|MO" 74 0 0 139 1 1 1 "Dorsal spinocerebellar tract|dsc|MO" 75 36 198 224 1 1 1 "Ventral spinocerebellar tract|vsc|MO" 76 135 206 250 1 1 1 "Paratrigemninal nucleus|Pa5|MO" 77 255 87 95 1 1 1 "Spinal trigeminal nucleus|Sp5|MO" 78 111 209 26 1 1 1 "Fiber tracts|FT|Brain" 79 128 49 124 1 1 1 "Tectospinal tract|ts|FT" 80 100 149 237 1 1 1 "Fasciculus retroflexus|fr|FT" 81 240 230 140 1 1 1 "Mammillothalamic tract|mt|FT" 82 10 34 250 1 1 1 "Mammillary peduncle|mp|FT" 83 245 0 2 1 1 1 "Inferior cerebellar peduncle|icp|FT" 84 0 2 33 1 1 1 "Mesencephalic trigeminal tract|me5|FT" 85 255 42 171 1 1 1 "Retromamillary decussation|rmx|FT" 86 255 255 0 1 1 1 "Optic chiasm|och|FT" 87 24 238 195 1 1 1 "Optic tract|opt|FT" 88 255 182 193 1 1 1 "Sensory root of trigeminal nerve|s5|FT" 89 104 45 182 1 1 1 "Cerebral peduncle|cp|FT" 90 60 182 114 1 1 1 "Stria terminalis|st|FT" 91 19 0 238 1 1 1 "Cingulum|cg|FT" 92 12 0 178 1 1 1 "Stria medullaris of the thalamus|st|FT" 93 159 0 226 1 1 1 "Fornix|f|FT" 94 0 84 10 1 1 1 "Lateral ventricle|LV|V" 95 0 178 210 1 1 1 "3rd ventricle|3V|V" 96 207 89 52 1 1 1 "Cerebral aqueduct|Aq|V" 97 47 79 79 1 1 1 "4th ventricle|4V|V" 98 108 92 210 1 1 1 "Interventricular foramen|IVF|V" 99 128 128 0 1 1 1 "Medulla oblongata|MO|Brain" 100 255 71 172 1 1 1 "Olfactory bulb|OB|FBr" 101 255 138 0 1 1 1 "Forebrain|FBr|Brain" 102 255 227 134 1 1 1 "Diencephalon|Di|Brain" 103 87 210 41 1 1 1 "Superior colliculus|SC|MBr" 104 255 255 224 1 1 1 "Hindbrain|HBr|Brain" 105 141 255 151 1 1 1 "Cerebellum|Cer|HBr" 106 255 225 0 1 1 1 "Ventricles|V|Brain" 107 0 243 135 1 1 1 "Hypothalamus|H|Di" 108 87 255 248 1 1 1 "Basal Ganglia|BG|FBr" 109 86 134 255 1 1 1 "Thalamus|Th|Di" 110 255 0 79 1 1 1 "Hippocampus|Hip|FBr" 111 0 30 255 1 1 1 "Pons|PN|HBr" 112 156 83 255 1 1 1 "Midbrain|MBr|Brain" 113 255 145 211 1 1 1 "Inferior colliculus|IC|MBr" 200 252 15 13 1 1 1 "[registration] dentate gyrus" 201 255 240 245 1 1 1 "[registration] hippocampal fissure" 202 139 0 0 1 1 1 "[registration] olfactory bulb EPl" 203 37 255 0 1 1 1 "[registration] external plexiform layer" 204 63 179 103 1 1 1 "[registration] fibres" 205 106 90 206 1 1 1 "[registration] brainstem L" 207 233 150 122 1 1 1 "[registration] piriform cortex, layer 2" 208 95 210 190 1 1 1 "[registration] fibres in olfactory bulb"